Pushed a fix for that. The story is quite complicated and probably not resolved forever I thought to follow GNU-Emacs, using the option key as Emacs meta-key and supporting the common keys on the MacOS command keys.
My Macbook keyboard it is only the € that is on option-2, so I could play with this. It seems I cannot type the € in Emacs either :(.
As a first step, any key combination that results in an ASCII printable character is now never sent as an option/meta key-down. That at least allows you to write Prolog In addition, there is a resource
event.macos_option_characters: "€"
that contains additional non-ASCII characters that must be passed as text input rather than as option/meta keys.
Another approach might be to generate a key-down event for all option keys (as we did) and only make that block the text input if the key-down is processed successfully. That requires far more changes though.